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XORRO Rapid Paired-End Read Overlapper.
(Improving the quality) (Quality control, trimming, error correction and pre-processing of data) -
svaseq removing batch effects and other unwanted noise from sequencing data.
(Improving the quality) (Quality control, trimming, error correction and pre-processing of data) -
FineSplice Enhanced splice junction detection and estimation from RNA-Seq data.
(General tools) (Normalization, quantitative analysis and differential expression) -
Flipflop FlipFlop implements a fast method for de novo transcript discovery and abundance estimation from RNA-Seq data. It differs from Cufflinks by simultaneously performing the identification and quantitation tasks using a convex penalized maximum likelihood approach, which leads to improved precision/recall.
(Genome-guided assemblers) (Transcriptome assemblers) -
Busco provides quantitative measures for the assessment of genome assembly, gene set, and transcriptome completeness, based on evolutionarily-informed expectations of gene content from near-universal single-copy orthologs selected from OrthoDB tool.
(Assembly evaluation tools) (Transcriptome assemblers) -
Brain RNA-Seq An RNA-Seq transcriptome and splicing database of glia, neurons, and vascular cells of the cerebral cortex.
(Human related) (RNA-Seq databases)
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